Wesley Kwong
- Total activity 10
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 1
Activity overview
Latest activity by Wesley Kwong-
Wesley Kwong commented,
Hi all, My apologies for not being able to reply quickly. The issue was utilizing the preexisting contamination file. Using Philipp's command to generate my own contamination files solved the probl...
-
Wesley Kwong commented,
I have added you as admin in the bucket.
-
Wesley Kwong commented,
Hi Samantha, I recognize that I am still getting the same error message where its asking for the SRR7588418.hg38.tsv file. But I believe this file that would be inputted to generate the pileup tabl...
-
Wesley Kwong commented,
Hi Samantha, The submission id is 81583498-648e-4e70-8452-80509b626927. Thank you!
-
Wesley Kwong commented,
Hi Josh and Genevieve, After some troubleshooting, I was able to run the Mutect2 pipeline successfully when I added both the pon and genomAD files without the variant for contamination files. But o...
-
Wesley Kwong commented,
Hi Josh, Modifying the memory outputted seems to have solved one problem. Now I'm getting this error for both the normal and tumor pileup tables. 2022/06/06 19:42:33 Starting container setup. 2022/...
-
Wesley Kwong commented,
Hi Josh, I reran the workflow with more memory by clicking the rerun with more memory option with a memory retry factor of 1.5 and still getting the same error. I can confirm that terra has access ...
-
Wesley Kwong commented,
Hi Josh, I have toggled the support button. The workspace link is here. Thank you!
-
Wesley Kwong created a post,
No Pileup Tables
AnsweredHi, I've been having trouble running the Mutect2-GATK pipeline on terra. I've been getting the error that the tumor and normal pileup table isn't being created. Originally, I only inputted the requ...