nagam surya
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Activity overview
Latest activity by nagam surya-
nagam surya commented,
I am actually trying to connect as a guest.
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nagam surya commented,
I am still facing the same issue.
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nagam surya created a post,
Accessing the resource bundle.
AnsweredI tried accessing ftp://ftp.broadinstitute.org/bundle to access the hg19 subfolder under the resource bundle. But I am unable to connect to the server. Can anybody help me with this please?
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nagam surya commented,
Okay. Thanks
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nagam surya commented,
Hi Genevieve, so I found out that my eval VCF was formed using hg19 as reference. I had a look at the resource bundle maintained by GATK and found out that you guys have hg38 reference available fo...
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nagam surya commented,
Oh ok. Thanks for informing. As these files are very huge am not able to open them in excel and view the meta information. I tried using R but am able to view only first 100 lines. So could you ple...
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nagam surya commented,
Am not sure how to share the headers.Hence I am sharing the vcf files itself(which can be found in the drive link).https://drive.google.com/drive/folders/1gp9j0Ut1LlQkDvf0rnJcE12QJOiiGfRd?usp=sharing
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nagam surya commented,
Also I observed the prgress meter. It always crashes after processing roughly 65 million records.
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nagam surya commented,
Hey, how's it going? Just wanted to let you know about the issue. So the same eror pops up whenever my eval file is large(like 2 or 3 gb). It works fine when my eval file is in between 100 to 400 m...
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nagam surya commented,
Same issue with the latest version as well.