Jakub S

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    Jakub S commented,

    PS, for completeness: am aware of the following workflow https://gatk.broadinstitute.org/hc/en-us/articles/360035531112--How-to-Filter-variants-either-with-VQSR-or-by-hard-filtering.

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    Jakub S created a post,

    Variant Quality Score Recalibration


    Hi, In gatk4, my understanding is that SnpEff has been superceded (now years ago). My question relates to cohort calling of hundreds of WES samples using the workflow. GenotypeGVCF has been run on ...