Daniel Castañeda Mogollón
- Total activity 7
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 2
Activity overview
Latest activity by Daniel Castañeda Mogollón-
Daniel Castañeda Mogollón commented,
Hi Genevieve, Thanks for your response. Of course, allow me to elaborate! In my P. falciparum gene of interest there are two mutants that are known to confer resistance to a treatment. These two mu...
-
Daniel Castañeda Mogollón commented,
Is the -bamout option from the VariantCaller doing that maybe? I realized what I am asking for is something doable from the HaplotypeCaller. Would it work if I obtain a bamout file from my filtered...
-
Daniel Castañeda Mogollón created a post,
Estimate genotype proportions from filtered variants
Hello! I am a new user to your pipeline! And so far I love how intuitive it is and easy to implement. However I am having a hard time estimating certain proportions. Here's what I am doing: I have ...
-
Daniel Castañeda Mogollón commented,
Yes! That fixed the issue! Thanks a lot!
-
Daniel Castañeda Mogollón commented,
Hello! I would like to follow up on this as I am getting the same error as well. Here's what I've done so far: Alignment of raw .fastq to a reference: bwa -mem 3d7_dhps.fasta R1.fastq R2.fastq > S1...