Renald James Legaspi
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Activity overview
Latest activity by Renald James Legaspi-
Renald James Legaspi created a post,
PathSeq Pre-built DB Breakdown Per Microbial Group
Hi Gatk Devs! I am trying to know the number of members per microbial group (e.g., bacteria, virus...) in the pre-built db in this link gs://gatk-best-practices/pathseq/resources/ I've tried read...
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Renald James Legaspi commented,
Hi Genevieve, We have decided to terminate run and just proceed to db truncation just like what you have suggested. Thank you for the resource link. It is of great help to us.
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Renald James Legaspi commented,
Hi Genevieve,I believe that it is still running the process for '[bwa_index] Construct BWT for the packed sequence...' And the memory and cpu are being engaged as depicted in ff photo Oh thank you...
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Renald James Legaspi created a post,
BwaMemIndexImageCreator:: Expected running time for 1 TB db
AnsweredI've been running BwaMemIndexImageCreator for 1TB db and it still runs after a month. Do you have a benchmark data that I can use to predict it's expected finish. I am running it in a high-performa...