1. Getting Started
2. Tutorials
3. (How to part II) Sensitively detect copy ratio alterations and allelic segments

Great instruction. Can I ask what is the estimated resolution of CNV detection, if I have whole genome sequencing data at 100X , and use 1000bp as the bin size?  thank you!  

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• Vincent YU
• October 17, 2022 22:42
• 0 votes

1. Getting Started
2. Tutorials
3. (How to part I) Sensitively detect copy ratio alterations and allelic segments

Thank you very much for the tutorial!

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• Vincent YU
• September 07, 2022 20:44
• 0 votes

1. Community
2. General Discussion
3. What intervals were used to create GATK's reference panel of normals for WGS CNV calling?

I think Tracy raise a great question,  If you only provide the PON but not what interval were used to generate the PON, then Denoise will error.

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• Vincent YU
• September 07, 2022 19:56
• 0 votes

1. Tool Index
2. 4.2.6.1
3. CreateReadCountPanelOfNormals

Could you please provide a PON for somatic CNV pipeline for hg38? Thank you!!!

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• Vincent YU
• September 07, 2022 19:40
• 0 votes