Eva König
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I/O considerations for joint variant calling
Dear GATK community, I need to perform joint variant calling for 3600 WES sample (gvcfs already generated, no database yet). I have access to a powerful cluster with many CPUs and much memory, howe...
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How can the difference between Mutect2 FORMAT fields FAD, F1R2, F2R2, SB and AD be explained?
AnsweredDear community, I would like to understand the FORMAT strings of Mutect2 better. Here is an example of a somatic variant from running the Mutect2 pipeline using GATK 4.2.5.0 17 29665040 . ...