Eva König
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Activity overview
Latest activity by Eva König-
Eva König commented,
Thank you for providing this fix, it works great. I do get the scatter plots for the different annotations. However, I was wondering where the tranches plot for the SNPs has gone. It looks like the...
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Eva König commented,
Thank you Gökalp Çelik for this tip, I will look into the biggest practices.
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Eva König created a post,
I/O considerations for joint variant calling
Dear GATK community, I need to perform joint variant calling for 3600 WES sample (gvcfs already generated, no database yet). I have access to a powerful cluster with many CPUs and much memory, howe...
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Eva König commented,
Thank you Genevieve Brandt (she/her) your answer was very helpful.
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Eva König created a post,
How can the difference between Mutect2 FORMAT fields FAD, F1R2, F2R2, SB and AD be explained?
AnsweredDear community, I would like to understand the FORMAT strings of Mutect2 better. Here is an example of a somatic variant from running the Mutect2 pipeline using GATK 4.2.5.0 17 29665040 . ...