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Bilge Tabak

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Latest activity by Bilge Tabak
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    Bilge Tabak commented,

    1. Community
    2. New User Advice
    3. GATK MarkDuplicatesSpark output error

    Hello Genevieve Brandt (she/her), As you recommended, I run the program one more time and i saw this at the very end of the program: 22/03/13 19:17:12 INFO Executor: Finished task 3696.0 in stage ...

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    Bilge Tabak created a post,

    GATK MarkDuplicatesSpark output error

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    1. Community
    2. New User Advice

    Hello, i am using gatk-4.2.5.0 version for MarkDuplicatesSpark with ~40 gb data but i am facing an error. It does run the command but it does not produce an output file. I've stopped the running pr...

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