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sabrina legoueix

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Latest activity by sabrina legoueix
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    sabrina legoueix created a post,

    genomicsdbimport add new samples

    Answered
    1. Community
    2. Special GATK Use Cases

    Hello, First, I would like to run genomicsdbimport with 2 samples 131 and 132 to create the initial gvcf_database. Once finished, I would like to run it a second time to add information from new sa...

    • sabrina legoueix
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    sabrina legoueix created a post,

    VQSR dataset preparation

    Answered
    1. Community
    2. New User Advice

    Hi, My information are : a) GATK version used: gatk-4.2.0.0b) Exact command used: gatk -Xmx40g VariantRecalibrator \-R $genome \-V cohort.vcf.gz \-an QD -an MQRankSum -an ReadPosRankSum -an FS -an ...

    • sabrina legoueix
    • 2 followers
    • 2 comments
    • 0 votes