Jonathan Klonowski
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Recent activity by Jonathan Klonowski Sort by recent activity-
No one actually looks at the comments. Lol. Useless.
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It is not clear by this article what the file extension is for the GenomicsDB object, where it is shored, how to find it, or how to identify it.
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can you append a gvcf to a previously created gendb database? for example: gatk GenomicsDBImport \ -V gendb://my_database -V data/gvcfs/mother.g.vcf \ -V data/gvcfs/father.g.vcf \ ...
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It is not clear at what step do you add the information from a new batch of genotyped samples to the previously genotyped information to solve the N + 1 problem. Do I run GenomicsDBImport on the ne...
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What purpose does --pedigree serve? It says "Pedigree file for determining the population "founders"", but I do not understand what the output is or what that output can be used for.
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Hello, I am trying to run GenomicsDbImport. Is this compatible with "-XX:+UseParallelGC -XX:ParallelGCThreads=4” I am asking because it seems that the command is restricted to a single node (4.1.5...
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Are there/where there any advances on getting GenomicsDbImport to have the ability to run in parallel, or is GenomicsDbImport just limited to a single core still?