Jonathan Klonowski
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Activity overview
Latest activity by Jonathan Klonowski-
Jonathan Klonowski commented,
Is -A PossibleDeNovo no longer an option?
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Jonathan Klonowski commented,
No one actually looks at the comments. Lol. Useless.
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Jonathan Klonowski commented,
It is not clear by this article what the file extension is for the GenomicsDB object, where it is shored, how to find it, or how to identify it.
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Jonathan Klonowski commented,
can you append a gvcf to a previously created gendb database? for example: gatk GenomicsDBImport \ -V gendb://my_database -V data/gvcfs/mother.g.vcf \ -V data/gvcfs/father.g.vcf \ ...
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Jonathan Klonowski commented,
It is not clear at what step do you add the information from a new batch of genotyped samples to the previously genotyped information to solve the N + 1 problem. Do I run GenomicsDBImport on the ne...
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Jonathan Klonowski commented,
What purpose does --pedigree serve? It says "Pedigree file for determining the population "founders"", but I do not understand what the output is or what that output can be used for.
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Jonathan Klonowski commented,
Hello, I am trying to run GenomicsDbImport. Is this compatible with "-XX:+UseParallelGC -XX:ParallelGCThreads=4” I am asking because it seems that the command is restricted to a single node (4.1.5...
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Jonathan Klonowski commented,
Are there/where there any advances on getting GenomicsDbImport to have the ability to run in parallel, or is GenomicsDbImport just limited to a single core still?