sinc
- Total activity 4
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 2
Activity overview
Latest activity by sinc-
sinc created a post,
Distinct allele frequency patters by HaplotypeCaller and Mutect2 for the same sample
AnsweredI have analyzed a whole genome sequence of my sample (coverage = approx. x30) by HaplotypeCaller (a single sample) then Mutect2 (no matched control). The number of mutations (SNVs and INDELs) detec...
-
sinc created a post,
Why doesn't haplotypecaller use PON?
I am new to GATK and have just run HaplotypeCaller several times according to the best practice. I am now planning to try Mutect2 to compare my normal and tumor samples, but am rather confused by t...