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Activity overviewLatest activity by JW
Hi Pamela, thank you for your confirmation, so this applies to all steps after creating the De-Bruijn graph also ? For instance, no unmapped reads are used at any point after creating the De-Bruijn...
JW created a post,
Confirmation that Mutect2 /haplotype caller only use reads mapped within the active region
Hi, firstly thank you for a great set of tools! I am looking for clarification on how each active regions is evaluated in Mutect2 (4.1.X+) / Haplotype caller. It is not explictly stated in the doc...