
Jacob Wang
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BQSR and VQSR resource for CHM13 (T2T) genome assembly
Hello! I am now mapping NGS data to the CHM13 (T2T) genome. I wonder how to perform BQSR and VQSR for I cannot find the resource of known sites for the CHM13 (T2T) genome. Does anyone know how to d...
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"Did not inflate expected amount" Error
AnsweredHi! I'm doing WGS analysis of a pedigree of three individuals using GATK 4.2.0.0. Everything went on well for the first individual. However, in the step of generating gvcf file from bam file, I enc...