Rebecca Halperin
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Latest activity by Rebecca Halperin-
Rebecca Halperin commented,
No, I don't see STRANDQ in the INFO field in any records in the output of FilterMutectCalls. I do see records with "strand_bias" in the FILTER column, so it must be calculated internally but not w...
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Rebecca Halperin commented,
Hi Genevieve, Thanks for your response. The link to the forum that you shared does confirm that "STRANDQ" is the strand bias score that is used for setting the "strand_bias" filter. I do want to ...
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Rebecca Halperin created a post,
STRANDQ missing from mutect2 vcf records
Answeredd) Where do I find the strand artifact score calculated by mutect2? I see how it is calculated in section II.D of the mutect2 white paper, but I'm wondering if it is possible to have the score emi...