Naomie Abecassis
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Activity overview
Latest activity by Naomie Abecassis-
Naomie Abecassis commented,
Thank you Genevieve-Brandt-she-her for this clarification!
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Naomie Abecassis created a post,
MarkDuplicates not checking sequences
AnsweredHello, I'm using MarkDuplicates tool on a SAM file and it looks like the tools does not compare the sequences of the reads but just compares their starting alignment position. This is the reads of ...
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Naomie Abecassis commented,
Thank you Pamela Bretscher
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Naomie Abecassis commented,
Hi Pamela, actually I was talking about the score probability computed to define whether a region is active or not. The article that you mentioned in your first answer (ActiveRegion determination (...
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Naomie Abecassis commented,
Hi Pamela,thank you for your quick answer. I still have trouble understanding how the per score probability is computed: it is explained that the reference confidence model is used, but in this oth...
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Naomie Abecassis created a post,
Theorical model for Active region detection
AnsweredHello, I'm interesting in understanding the entire haplotype caller algorithm deeply, but I cannot find the exact explanation of how an active region is detected (how the active probability is com...