Ambu
GitHub : https://github.com/ambuvjyn LinkedIn : https://www.linkedin.com/in/ambuvijayan/
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The error message you are seeing indicates that the reference genome fasta file and the GTF file you are using have different contigs or chromosome names than the VCF file you are using as a known ...
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https://github.com/gatk-workflows/gatk4-rnaseq-germline-snps-indels
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Hi lid.zigh, If you are using anaconda or miniconda for GATK4, You can rectify this issue by simply downgrading the java from 11 to 8. Activate your gatk in conda and use this command conda instal...
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Hi David Gómez-Sánchez, If you are using anaconda or miniconda for GATK4, You can rectify this issue by simply downgrading the java from 11 to 8. Activate your gatk in conda and use this command co...