Vee Koo
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Activity overview
Latest activity by Vee Koo-
Vee Koo commented,
Okay, is it then safe to assume that those empty spaces contain only reads that are similar to the reference genome?
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Vee Koo created a post,
HaplotypeCaller's -bamout created BAM-file not showing reads even with --force-active and --output-mode EMIT_ALL_ACTIVE_SITES
AnsweredIf you are seeing an error, please provide(REQUIRED) : a) GATK version used: GATK 4.2.4.0 b) Exact command used: gatk HaplotypeCaller -R $genomeDB -I $sample_arr -O $outputdir/$outputname --tmp-dir...
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Vee Koo commented,
Hello, I have this problem that I have encountered in regards to HaplotypeCaller's -bamout produced realigned BAM and AD according to VCF. The VCF has been done with 63 samples through the Haplotyp...
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Vee Koo commented,
Hi, I have created GVCFs with HaplotypeCaller (4.2.0.0) and it seems that SB-values aren't showing if MIN_DP is present in the FORMAT field. Why is that?
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Vee Koo commented,
I would also greatly appreciate a response to this as there doesn't seem to be an answer for it anywhere on the Internet.