elhadi iich
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Activity overview
Latest activity by elhadi iich-
elhadi iich commented,
Hi Kostas, how did you solve the issue? I seem to have the same problem
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elhadi iich created a post,
looking for panel of normals and allele frequency for hg19 genome build
Answeredhi all trying to run Mutect2 using hg19 reference genome but can't find the panel of normal and allele frequency germline-resource for that build. Anyone knows where I can find them? regards
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elhadi iich created a post,
FilterMutectCalls java.lang.ArrayIndexOutOfBoundsException: 2
I am running gatk 4.0.2 and I get a java error when running FilterMutectCalls. Using GATK jar /nfs/app1/bioinfo/gatk/4.0.2.1/gatk-package-4.0.2.1-local.jarRunning: java -Dsamjdk.use_async_io_rea...
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elhadi iich commented,
I believe I have found the solution First I did what Field did by renaming the file to vcf.gz then extracted the vcf file. Next I installed 'tabix' in order to recompress the vcf file using bgzip i...
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elhadi iich commented,
Hi Genevieve, I tried what Field-ye Tan did but that alone wasn't enough to solve the problem. I believe I have found the solution First I did what Field did by renaming the file to vcf.gz then ext...
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elhadi iich commented,
Hi all, Running against similar issues using the somatic-hg38_1000g_pon.hg38.vcf.gz file. Using GATK jar /home/svu/phaei/.conda/miniconda/envs/biotools/share/gatk4-4.2.0.0-1/gatk-package-4.2.0.0-lo...
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elhadi iich commented,
Running against the same issue. Does anyone have a solution yet?