Nicolas Servant
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Activity overview
Latest activity by Nicolas Servant-
Nicolas Servant commented,
Thank you Genevieve Brandt (she/her) for the answer. When you say that " The algorithm gives a corrected randomized QD value using a Gaussian model around 30. ", it would be great to have a way to ...
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Nicolas Servant commented,
I only have one sample in the vcf. And actually, that's my point, on the example I put below, none of the QD calculation seems to work in this case ... Best
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Nicolas Servant commented,
Hi Genevieve Brandt (she/her) ! When I compared the results of the GATK calls in per-chromosome mode, versus in whole-exome mode, I only have minor differences in the total number of detected varia...
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Nicolas Servant commented,
Hi, To follow up on that discussion, I also found some strange results in the QD field. I made two tests ; first running haplotypeCaller on a single complete bam file (WES), or running it with `-L`...