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Alexandre Mondaini

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Latest activity by Alexandre Mondaini
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    Alexandre Mondaini commented,

    1. Community
    2. Documentation Questions
    3. mutect2 multi-sample

    Hi David, Thanks for the quick answer. Is this the default mode on which samples can be run using the WDL file ? https://github.com/broadinstitute/gatk/blob/master/scripts/mutect2_wdl/mutect2_multi...

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    • Alexandre Mondaini
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    Alexandre Mondaini commented,

    1. Community
    2. Documentation Questions
    3. mutect2 multi-sample

    Hello GATK team, Please help me clarify if I understood correctly this thread. Say I have several tumor samples and only one normal from different patients. For example: patient1 normal1.bam tumor1...

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    • Alexandre Mondaini
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    Alexandre Mondaini commented,

    1. Tool Index
    2. 4.1.7.0
    3. PlotModeledSegments

    Hello there, I'm experiencing some plotting issues with this tool, mostly the right side of the image is totally squished and I can't visualize the high number chromosomes. This is the script I use...

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    • Alexandre Mondaini
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    Alexandre Mondaini commented,

    1. Tool Index
    2. 4.1.5.0
    3. PlotDenoisedCopyRatios

    Hi there, I'm experiencing some plotting issues with this tools, mostly the right side of the image is totally squished and I can't visualize the high number chromosomes. This is the script I used ...

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    • Alexandre Mondaini
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