Hi all, I have a question if in the case of Canis lupus familiaris (DOG) the BQSR is needed? Thanks in advance! Joanna
Hi, I'm running GATK v 220.127.116.11 and I would like to run HaplotypeCaller with the Snakemake but sth is not working for some samples. I'm calling GATK as follows: rule HaplotypeCaller: input: ...