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Victoria Buswell

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Latest activity by Victoria Buswell
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    Victoria Buswell created a post,

    Exclude non variant sites

    Answered
    1. Community
    2. New User Advice

    Hello, I have produced a VCF from the best practice pipe line ( bams to gvcf's, genomicDBImport, GenotypeGVCFs, GatherVcfs). I'm using the version gatk-4.2.0.0.  I was wondering if I am using the c...

    • Victoria Buswell
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    • 1 comment
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    Victoria Buswell created a post,

    GenotypeGVCF too many genotypes

    1. Community
    2. Non-Human

    I am using using gatk-4.2.0.0. I am using pooled ddRADseq data. I have performed the pipeline as follows: ./gatk HaplotypeCaller \ -I /home/bams/4_12.bam \-R /home/gatk/genomic_refseq.fna \-O /home...

    • Victoria Buswell
    • 3 followers
    • 1 comment
    • 1 vote