Avatar

林林达

Follow
  • Total activity 6
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 1
  • Subscriptions 2

Activity overview

Latest activity by 林林达
  • Avatar

    林林达 commented,

    1. Tool Index
    2. 4.1.9.0
    3. BaseRecalibrator

    Does the " -bqsr" option removed from BaseRecalibrator?? I also meet the same problem. I need produce a second recalibration table and analyze covariates. 

  • Avatar

    林林达 commented,

    1. Tool Index
    2. 4.0.11.0
    3. FilterMutectCalls

    I want generation a bam filie in this step, so i add "--add-output-sam-program-record filtered.bam" in the end of the command, gatk FilterMutectCalls -R /home/dlin/reference/bwa-ref-hg19/Homo_sap...

  • Avatar

    林林达 commented,

    1. Getting Started
    2. Tutorials
    3. (How to) Call somatic mutations using GATK4 Mutect2

    I use this I use this command to generate pon.vcf.gz, "gatk CreateSomaticPanelOfNormals -R /home/dlin/reference/bwa-ref-hg19/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa --germline-resource af-o...