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Subinoy Biswas

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Latest activity by Subinoy Biswas
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    Subinoy Biswas created a post,

    RNA-Seq variants and introns

    1. Community
    2. General Discussion

    1. Why do I see introns in the RNA-Seq variant analysis results? 2. In the RNA seq variant workflow, is there any step where introns data could be removed? 3. Can we run multiple samples for RNA-Se...

    • Subinoy Biswas
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    Subinoy Biswas commented,

    1. Tool Index
    2. 4.0.0.0
    3. CollectFragmentCounts (BETA)

    I am using gatk 4.2.0.0 conda package and I got the following error "A USER ERROR has occurred: 'CollectFragmentCounts' is not a valid command." Please tell what's the equivalent command in the gat...