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PostsVotes on activity by Robert Baldwin Sort by votes
What does RAW_MQ annotation mean ?
REQUIRED for all errors and issues: a) GATK version used: 4.3b) Exact command used: I didn't create the filec) Entire program log: I have a VCF where the records have no RMS mapping quality (MQ) a...
Question: Variant Calling when Genetic Distance between Reference and Samples is Greater than it is for Humans: Does GATK still perform well?Answered
Hello, I need to do some variant calling on 50 diploid fish genomes sequenced to ~10X. The reference is from the same species but a different population. In terms of genetic distance, the MASH dist...