- Total activity 9
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 3
CommentsRecent activity by Yiguan Wang Sort by recent activity
Hi Genevieve, Whether I use " -A StrandBiasBySample" or not seems no difference on my data. gatk GenotypeGVCFs -R dmel-all-chromosome-r5.44.fasta \-V gatk_parent_offspring.g.vcf.gz \-L 2R:207682...
Hi Genevieve, thanks a lot for your reply. I've read the post you mentioned, but I don't think it answers my confusion. I did some post-HaplotypeCaller filtering, but I am afraid it may not remove ...
Hi Genevieve, I can confirm the SB annotation exists in the g.vcf file. But it disappears in the vcf file after using "GenotypeGVCFs". Here is the example of vcf file: https://drive.google.com/fil...
Hi Pichu, I encounter the same problem as you described. I failed to obtain the "SB" annotation in the VCF file. I am wondering have you solved your problem, and could you share your solutions? Tha...
Currently working on Drosophila genomes, there isn't a known list of variants. Just wondering how to perform bootstrap to generate a set of known variants, is there a pipeline about that? Thanks in...