
suzy_bunters
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Recent activity by suzy_bunters Sort by recent activity-
Hi Genevieve, it's now running in the format you suggested, thank you. Each job I submit to the cluster sits in a queue for hours, so testing different formats was taking a long time!
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Hi Genevieve Brandt (she/her), There are no @RG lines in the header (the headers either start with @HD, @SQ, or @PG). The original fasta files from which the bam was generated were trimmed using Tr...
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Hi Genevieve, thanks for your reply (and sorry to nag) :D I checked the forum before posting but the other solutions I found don't work for me. I'll be more patient though!
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Hi there, is anyone able to help on this?
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No, this is the first time I've tried using GATK. It's very possible there was an issue two years ago that I didn't address - I'd only just started working with WGS and wasn't accustomed to working...
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Hi Genevieve Brandt (she/her), Thanks so much for your reply. I have a couple of follow up questions, if you have the time! 1) Do you know of any reason why this could have happened, other than th...