Loren Cassin Sackett
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The last paragraph says "This is how people used to do variant analysis on large numbers of samples, but we do not recommend proceeding this way because that workflow suffers from serious methodolo...
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What is the recommended workflow if we study non-model organisms? I don't have a set of known SNPs I can use in BQSR, so I was going to proceed straight to HaploCaller... but then I don't understa...