
Julianne Radford
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Recent activity by Julianne Radford Sort by recent activity-
Checking ReadGroup name in BAM file with GATK instructions
If you are seeing an error, please provide(REQUIRED) : a) GATK version used: b) Exact command used: c) Entire error log: If not an error, choose a category for your question(REQUIRED):a)How do I (....
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HaplotypeCaller and Read Group Errors
GATK version used: 4.1.9.0 (1) trying to use HaplotypeCaller including "--java-options "Xmx4g" command. Exact command used: (base) Juliannes-MacBook-Pro:gatk-4.1.9.0 julianneradford$ ./gatk --java...
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"No positional argument is defined" Error in HaplotypeCaller
Hi there, I am trying to run HaplotypeCaller on some bam files, using this command: ./gatk HaplotypeCaller \ - R Rflav_transcriptome_sequences.fa \ - I SRR5341585.bam \ - O 85variants.g.vcf \ - ER...