Marc Crepeau

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Latest activity by Marc Crepeau
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    Marc Crepeau created a post,

    Where are the sample-level annotations?

    How do I get GATK to write the sample-level annotations to my VCF file?  Most VCF files I've worked with have a header that includes FORMAT and then the names of each of my samples.  Then each reco...

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    Marc Crepeau commented,

    Okay, this was my bad.  The problem was, in fact, the java version.  It worked fine when I switched to java version 1.8.  To roll my Mac back to that version I used the excellent instructions here:...

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    Marc Crepeau created a post,

    Cromwell stuck at WaitingForReturnCode on Mac

    I am using Cromwell version 55 on a MacBook Pro running OS 10.15.7 (Catalina).  I thought I'd learn to use Cromwell, so I started with the 5-minute introduction tutorial found here: https://cromwel...