J LoPiccolo
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Activity overview
Latest activity by J LoPiccolo-
J LoPiccolo commented,
And how does the version of hg38 used in GATK (gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta) compare to these? Thanks
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J LoPiccolo created a post,
Difference between release versions of hg38
AnsweredHello, I have found all of the following releases of hg38 and was wondering how they differ. Very little information is available on this. hg38 (no version specified) GRCh38.99 (release date Jan...
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J LoPiccolo created a post,
Genomes in the cloud docker file
Is Dockerfile for genomes-in-the-cloud image publicly available, and if yes, where? I need to find out what version of the reference genome (hg38) is used with the following docker image. Thanks "...
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J LoPiccolo commented,
Sorry I just tried that, and it didnt work. can we find some other way, this is becoming very difficult!
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J LoPiccolo commented,
I am trying to upload the files using Finder on my Mac. I am connected to the server (folder is gsapubftp@ftp.broadinstitute.org), but it will not let me drag/drop any files.
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J LoPiccolo commented,
Thanks, I am able to access the server but not upload any files to it.
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J LoPiccolo commented,
Ok- I do not have Broad access so I will have to get that first. Is there a way for me to upload using Google cloud? That would be easier, thanks.
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J LoPiccolo commented,
Actually it does reproduce the error. The issue I am having now is that http://ftp.broadinstitute.org/ is not loading for me to upload the files.
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J LoPiccolo commented,
Ok- if it does not, my entire VCF is available in my workspace/Google bucket. Are you guys able to access that if I share the workspace and notebook with you?
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J LoPiccolo commented,
Hi, I am going to upload the bug report but I am afraid it's not possible to narrow down where in the VCF the problem is happening, because when I use SelectVariants to make piecemeal VCFs, the too...