Hiro Ama
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GetPileupSummaries raised an error: htsjdk.tribble.TribbleException
AnsweredHi all, When I do GetPileupSummaries for the following CalculateContamination analysis, an error arose about input vcf. a) GATK version used: gatk-4.1.9.0 b) Exact command used: gatk GetPileupSumm...
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What is the difference between "CNVSomaticPairWorkflow.common_sites" and "CNVSomaticPairWorkflow.intervals"?
AnsweredHi, I'm trying to execute gatk somatic cnv workflow using human exome data. And I made PON and intervals files from normal bams or reference fasta file that used at this analysis. When I checked cn...