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3. Funcotator to annotate VCF files with structural variants

Hi Genevieve, thanks for your reply, no problem, I'll see if I can make it work with FuncotateSegments. Regards Lucia

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• Lucia C
• January 21, 2021 23:26
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3. CNNScoreVariants error: AttributeError: 'str' object has no attribute 'decode'

Thanks, I just created a new post

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• Lucia C
• January 21, 2021 20:17
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3. CNNScoreVariants error: AttributeError: 'str' object has no attribute 'decode'

Hi Genevieve, this is a totally unrelated question, but if at all possible, could you please point me to where I can find information/who can answer this question related to funcotator: https://git...

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• Lucia C
• January 21, 2021 17:55
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3. CNNScoreVariants error: AttributeError: 'str' object has no attribute 'decode'

Hi again, Just to let you know, it works now. I realised that I was using GATK from the master branch, but I had activated the old gatk conda environment from the release version, as opposed to the...

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• Lucia C
• January 18, 2021 19:04
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3. CNNScoreVariants error: AttributeError: 'str' object has no attribute 'decode'

Hi Genevieve, I'm having the exact same error as the one described by WKaiser but I still keep getting the error after using the latest version of the master branch in github (v4.1.9.0-44-g62fca8b-...

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• Lucia C
• January 16, 2021 19:03
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