Alex Falconer
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Recent activity by Alex Falconer Sort by recent activity-
... and WSL is not recommended for production. Results may differ from real Linux (tested in WSL1).
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Maybe someone will come in handy ... samtools reheader only changes the header. You needed to compare the results of the commands:samtools view -H Kuu_sorted_dedup.bam | grep '^@RG' samtools view K...
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gatk --java-options '-Xmx40G -Dsamjdk.compression_level=5' ApplyBQSR ...
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# unavailable link https://gatkforums.broadinstitute.org/gatk/discussion/6484/how-to-generate-an-unmapped-bam-from-fastq-or-aligned-bam (A) Convert FASTQ to uBAM and add read group information usin...