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CommentsRecent activity by Alex Falconer Sort by recent activity
... and WSL is not recommended for production. Results may differ from real Linux (tested in WSL1).
Maybe someone will come in handy ... samtools reheader only changes the header. You needed to compare the results of the commands:samtools view -H Kuu_sorted_dedup.bam | grep '^@RG' samtools view K...
gatk --java-options '-Xmx40G -Dsamjdk.compression_level=5' ApplyBQSR ...
# unavailable link https://gatkforums.broadinstitute.org/gatk/discussion/6484/how-to-generate-an-unmapped-bam-from-fastq-or-aligned-bam (A) Convert FASTQ to uBAM and add read group information usin...