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Latest activity by JAY SINGH
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    JAY SINGH commented,

    Hello Genevieve, I am using GATK I am getting the same issue. Unfortunately, my issue is not solved after specifying --tmp-dir. Any other suggestion? Thanks and regards, Jay

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    JAY SINGH created a post,


    I have sorted my bam file by query name. what should be the --ASSUME_SORTED option in MarkDuplicates. In manual it is written about coordinate sorted bam file but not about query name sorted bam fi...

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    JAY SINGH commented,

    What should be the "--ASSUME_SORTED" option if the bam file is sorted by query name?