Haiying Kong

  • Total activity 9
  • Last activity
  • Member since
  • Following 0 users
  • Followed by 0 users
  • Votes 0
  • Subscriptions 4


Recent activity by Haiying Kong Sort by recent activity Recent activity Votes
  • GATK Funcotator missing DP and AF information from vcf file

    I am running Funcotator in gatk- to annotate vcf files. gatk Funcotator \-R $hg -V ${Lock_VarDict_dir}/$sample.vcf -O ${Result_VarDict_dir}/$sample.maf \--output-file-format MAF --ref-versio...

  • GATK Funcotator Variant_Classification

    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: b) Exact command used: c) Entire error log: If not an error, choose a category for your question(REQUIRED):a)How do I (....

  • Funcotator missing AF

    I am using Funcotator on GATK4. I found the the following particular variant in vcf file has missing AF value in the maf file produced by Funcotator. 2113 variants out of 1032388 total variants are...

  • Any documents for 199 columns in Funcotator output?

    GATK version 4 Funcotator  I got 199 columns in output. Is there any document to explain these columns?