Haiying Kong
- Total activity 9
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 4
Activity overview
Latest activity by Haiying Kong-
Haiying Kong commented,
Hi Genevieve Brandt I have uploaded the rows with missing AF in maf file on: https://github.com/Smurf-2020/Funcotator-MAF Thank you so much for trying to help me. I do not know exactly what stack t...
-
Haiying Kong created a post,
GATK Funcotator missing DP and AF information from vcf file
I am running Funcotator in gatk-4.1.9.0 to annotate vcf files. gatk Funcotator \-R $hg -V ${Lock_VarDict_dir}/$sample.vcf -O ${Result_VarDict_dir}/$sample.maf \--output-file-format MAF --ref-versio...
-
Haiying Kong created a post,
GATK Funcotator Variant_Classification
If you are seeing an error, please provide(REQUIRED) : a) GATK version used: b) Exact command used: c) Entire error log: If not an error, choose a category for your question(REQUIRED):a)How do I (....
-
Haiying Kong created a post,
Funcotator missing AF
I am using Funcotator on GATK4. I found the the following particular variant in vcf file has missing AF value in the maf file produced by Funcotator. 2113 variants out of 1032388 total variants are...
-
Haiying Kong created a post,
Any documents for 199 columns in Funcotator output?
GATK version 4 Funcotator I got 199 columns in output. Is there any document to explain these columns?