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Florence Morel

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    Florence Morel commented,

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    3. emit-ref-confidence error

    Thank you Genevieve for your quick answer! Where can I find the sample name and how should I write the command line with the --sample-name argument? Could you provide me an example? Thank you +++ A...

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    Florence Morel created a post,

    emit-ref-confidence error

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    If you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk4-4.1.4.1b) Exact command used: gatk HaplotypeCaller -I alignment_bwa/Nicolas-M2S2.sort.rg.md.filt.bam -R ./index/H3...

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