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CommentsRecent activity by maximus Sort by recent activity
Even I only provided the input BAM files and reference genome, without providing the germline resources, the Mutect2 program can't even produce a vcf file
I have tried using different reference sequences (UCSC vs Reqseq) and difference sources of different germline resources, and either I get A USER ERROR has occurred: Input files reference and featu...
The solution stated above is completely failed. I generate the BAM file from a certain hg38 reference sequence using bwa. Then I call Mutect2 done on the generated BAM and the same hg38 reference. ...