Hsu Pei-Chun
- Total activity 12
- Last activity
- Member since
- Following 0 users
- Followed by 0 users
- Votes 0
- Subscriptions 6
Activity overview
Latest activity by Hsu Pei-Chun-
Hsu Pei-Chun created a post,
can't generate .segment.vcf.gz when use PostprocessGermlineCNVCalls
AnsweredIf you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk-4.2.0.0b) Exact command used: gatk PostprocessGermlineCNVCalls --model-shard-path 3_CNV/*-model/ --calls-shard-path...
-
Hsu Pei-Chun created a post,
fail to execute GermlineCNVCaller
AnsweredIf you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk-4.1.9.0b) Exact command used: gatk-4.1.9.0/gatk GermlineCNVCaller --run-mode COHORT -L ../10cohort.filter.annotate...
-
Hsu Pei-Chun created a post,
fail to execute DetermineGermlineContigPloidy
AnsweredIf you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk:4.1.8.1b) Exact command used: gatk DetermineGermlineContigPloidy -L filter_annotated.interval_list -I cohort1_WGS-Z...
-
Hsu Pei-Chun created a post,
The missing value in Mutect2 vcf
a) GATK version used: gatk-package-4.1.8.1-local.jar and gatk-package-4.1.2.0-local.jarb) Exact command used: java -jar -Xmx96G -DGATK_STACKTRACE_ON_USER_EXCEPTION=true ~/tools/gatk-4.1.9.0/gatk-pa...
-
Hsu Pei-Chun created a post,
The missing value in Mutect2 vcf
If you are seeing an error, please provide(REQUIRED) : a) GATK version used: gatk-package-4.1.8.1-local.jar and gatk-package-4.1.2.0-local.jarb) Exact command used: java -jar -Xmx96G -DGATK_STACKTR...
-
Hsu Pei-Chun created a post,
"no suitable codecs found" by using CreateSomaticPanelOfNormals
a) GATK version I used: gatk-4.1.8.1b) Exact command used: java -jar ~/tools/gatk-4.1.8.1/gatk-package-4.1.8.1-local.jar CreateSomaticPanelOfNormals -V normals_for_pon_vcf.args -O test.vcf.gzc) En...