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HASSAN BADRANE

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Latest activity by HASSAN BADRANE
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    HASSAN BADRANE commented,

    Hi, you are describing the same issue I (and others) stated before. It's not due to BAM, it's simply GATK HaplotypeCaller considering that region too messy with so many gaps, that it removes the wh...

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    HASSAN BADRANE created a post,

    REAL Variant not called by HaplotypeCaller

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    Hello, I'm running into that widespread bug, in which real variant are not called by HaplotypeCaller. There are 10 variants clearly and easily visible to the eye, when viewing the BAM file. However...