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T. Li

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Latest activity by T. Li
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    T. Li created a post,

    Error Running IndexFeatureFile on Ensembl Mouse GTF file

    1. Community
    2. Non-Human

    I'm trying to create a dataset to use for Funcotator for the mouse genome. I'm encountering an issue running IndexFeatureFile on the following gencode file downloaded here: ftp://ftp.ebi.ac.uk/pub/...

    • T. Li
    • Edited
    • 2 followers
    • 1 comment
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    T. Li created a post,

    Known Sites for BQSR

    Answered
    1. Community
    2. Documentation Questions

    Which known site references should I use for BQSR of WGS/Exome data? On https://console.cloud.google.com/storage/browser/gcp-public-data--broad-references/hg38/v0, I see a bunch of VCFs: 1000G.phas...

    • T. Li
    • 9 followers
    • 5 comments
    • 6 votes