zyw
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Latest activity by zyw-
zyw commented,
Thank you very much, Genevieve Brandt. By setting parameter --create-output-variant-index to false, this problem has been perfectly solved.
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zyw created a post,
HaplotypeCaller - Shutting down engine - Encountering a large genome
For long chromosomes (800Mb), HaplotypeCaller (GATK4) is used to detect mutations. When it runs to 536Mb, it always encounters HaplotypeCaller-Shutting down engine. the log as follows: the command:...