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Robert Zeibich

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Latest activity by Robert Zeibich
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    Robert Zeibich created a post,

    GenomicsDBImport vs CombineGVCFs

    1. Community
    2. Germline

    When running 1. GenomicsDBImport + GenotypeGVCFs and 2. CombineGVCFs + GenotypeGVCFs I receive a different number of variants (more variants with the first pipeline than with the second pipeline) D...

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    Robert Zeibich commented,

    1. Community
    2. Other
    3. No results of CollectvariantCallingMetrics

    I removed the strange entries and the tool is working now.

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    Robert Zeibich commented,

    1. Community
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    3. No results of CollectvariantCallingMetrics

    I have just replaced the configs of a working VCF file with the configs of the not working VCFfile. Now, a different error is thrown: INFO    2022-04-29 22:15:45     CollectVariantCallingMetrics   ...

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    Robert Zeibich commented,

    1. Community
    2. Other
    3. No results of CollectvariantCallingMetrics

    Hi. I believe that I have a similar issue because I am also getting the NullPointerException, but I have to admit that the script produces an output: ...INFO    2022-04-29 20:49:44     CollectVaria...