woodword
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RNAseq short variant discovery pipline has the unused interval file
Today when I checked the RNAseq short variant discovery pipline (https://github.com/gatk-workflows/gatk3-4-rnaseq-germline-snps-indels/blob/master/rna-germline-variant-calling.wdl ) I found task S...
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New version of GATK leads to VariantRecalibrator error.
AnsweredThis post is a reminder for other GATK users/team. This "The provided reference alleles do not appear to represent the same position" error most likely occured because of the same reason as mention...