Jason Ni
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Hi Bob Thanks for the reply. It would be great if we could correspond through email. I wonder what you're email address is as I couldn't find it on GATK on Broad's website. To answer your question...
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[latest development]:By inspecting the scripts, I took my best educated guess on a sequence of scripts: 1. run gs_preprocess.wdl on each sample 2. run gs_run_cnv_pipeline.wdl on each metadata.zip 3...