Kountay Dwivedi
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Activity overview
Latest activity by Kountay Dwivedi-
Kountay Dwivedi commented,
Kindly let us know of a tool that converts FASTQ to uBAM for that is needed in Data Preprocessing phase of GATK Best Practices.
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Kountay Dwivedi commented,
Hi Maguelonne , Would it be possible for you share the details of sample dataset that you're using, if any?I am unable to find proper sample data over which I could practice GATK Best Practices. Th...
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Kountay Dwivedi commented,
Hi, I am also having an issue regarding conversion of .fq to .sam/.bam In the GATK Best Practices, in order to execute the step MergeBamAlignment, we need a uBam file and aligned bam file. However,...
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Kountay Dwivedi created a post,
Converting .bam to .fq and vice versa
AnsweredHow do I convert a .bam to .fq and vice versa without losing any data? That is, after conversion, I do not lose any original data or get any modified output (like change in read quality sqore). I ...
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Kountay Dwivedi commented,
Hi Genevieve Brandt ,Thank you so much for taking out your time. Could you please provide me a link to practice dataset, using which I could actually start practising the GATK Best Practices phases...
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Kountay Dwivedi created a post,
Where do I find sample dataset for practice?
AnsweredHi all, I am a Junior researcher, and I need to familiarise myself with GATK Best Practices. I went to the following link to start with Phase 1- Data Pre-processing (https://gatk.broadinstitute.org...
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Kountay Dwivedi commented,
Hi, I am a Junior Researcher, and I need to familiarise myself with GATK Best Practices. But I cannot find out sample dataset to test Data Pre-processing. Please help me out. Thanks.
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Kountay Dwivedi created a post,
What are the initial files required in order to go through the Data Preprocessing, Variant Discovery and IGV phases of Genomic analysis?
AnsweredHello, I am using GATK4 and I have downloaded and installed all the prior tools needed for the pipeline (Picard, BWA, SAM). Please pardon my question if it is not proper. According to the tutorials...