Kevin Lydon
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Activity overview
Latest activity by Kevin Lydon-
Kevin Lydon commented,
Hello, It appears that the documentation excerpt you shared is actually inaccurate. VariantFiltration does not have an option to exclude the variants. I'll make sure that documentation gets updat...
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Kevin Lydon commented,
Hi Aravind Sundar, It might work, but I can't say with full certainty. The baserecalibration could benefit from the more up-to-date SNPs, but there is the possibility that something has changed be...
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Kevin Lydon commented,
The non-IUPAC characters are probably in the alleles in the VCFs coming from the Parabricks pipeline. I think you'll probably have to delete those lines before running GenomicsDBImport.
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Kevin Lydon commented,
Hi! It looks like this is a bug in the VariantRecalibrator code that causes the R script generation to fail when there are duplicate annotations supplied with `-an`. I've created an issue on the ...